Changes in version 0.1.8                        

  - fixed compare_calls(), did not allow creads = T in "genotypes".
  - new function align_variants_ref() runs pairwise alignments with
    local reference sequences and attaches alignment stats to tidy
    variants. Useful to spot homologous/non-homologous variants.

                 Changes in version 0.1.7 (2026-02-17)                  

  - fixed CRAN checks: tempdir and tempfiles for examples and tests,
    remove examples for internal ::: functions, add @value where
    missing.
  - remove unused data objects msa and qlist.

                        Changes in version 0.1.6                        

  - first submission to CRAN.
  - trunc_amp(), includes 'filt_name' argument to add flexibility to
    output filtered names.
  - x-axis scale has changed in 'explore_dada()'
  - optimization vignette added.
  - 'out_popart()' internal 'write_delim(quote)' changed to "none".
  - replace absolute paths by temp paths in examples.

                        Changes in version 0.1.5                        

  - bug fixed in 'variant_call_dada()', dada2 is always converted to
    list to prevent errors associated to loci in one sample only.

                        Changes in version 0.1.4                        

  - 'demultiplex(mode = 'linked')' has been tested with real data. The R
    primers needed to be reverse-complemented. Fixed.

                        Changes in version 0.1.3                        

  - updated 'gen_wide2genalex()'. 'tidyr::separate_wider_delim()'
    replaced with base R code.
  - 'ploidy' attribute is kept for remove_hemizygotes

                        Changes in version 0.1.2                        

  - updated 'gen_wide2structure()'. 'tidyr::separate_longer_delim()'
    could not handle correctly NA's and the code was replaced with base
    R.
  - 'ploidy' attribute is kept for genotype conversions.

                        Changes in version 0.1.1                        

  - Update NEWs and README.

                        Changes in version 0.1.0                        

Initial Release

  - Core functions available.
  - Clean .git.
  - Stable version.
  - Old .git was removed and fresh .git was initiated after checking the
    rcmdcheck did not return any error.